samples.csv

sample_name,segmentation,qc,PMID,PMID_block,_code,Tcell phenotype,Primary/Metastasis,Basal/Luminal,Consensus,acquisition_id,mcd_file,created_by,created_at,url,sha1,downloaded,written_to,acquisition_date,RNA-seq_ID,Tcell Inflamation Signature ssGSEA ES,Tcell Inflamation Signature (z-score)
20200804_PM784_A1,FALSE,FALSE,PM0784,PM0784_A1,,Depleted,Metastasis,Luminal,,20200804_PM784_A1,20200804_PM784_A1.mcd,Hiranmayi Ravichandran,2020-10-09T14:03:25-07:00,https://api.box.com/2.0/files/728586112577,2664f0e4e586a77711bad7713d2f797c83d6663e,True,data/20200804_PM784_A1/20200804_PM784_A1.mcd,20200804,PM784_Z14_1_Case_RNASeq,-0.1018,-1.2576
20201001_PM1123_A11,TRUE,TRUE,PM1123,PM1123_A11,,Depleted,Metastasis,Luminal,,20201001_PM1123_A11,20201001_PM1123_A11.mcd,Hiranmayi Ravichandran,2020-10-09T13:18:54-07:00,https://api.box.com/2.0/files/728574190970,d7e7f1b64ed22d32195ddd3f055f87179cc837f2,True,data/20201001_PM1123_A11/20201001_PM1123_A11.mcd,20201001,PM1123_Z4_1_Case_RNASeq,-0.0636,-1.0878
20200923_PM784_A5,TRUE,,PM0784,PM0784_A5,,Depleted,Primary,Luminal,,20200923_PM784_A5,20200923_PM784_A5.mcd,Hiranmayi Ravichandran,2020-10-09T14:16:10-07:00,https://api.box.com/2.0/files/728589803437,100cca5549924589d6b95078ae70bf93dbae4b62,True,data/20200923_PM784_A5/20200923_PM784_A5.mcd,20200923,PM784_Z10_1_Case_RNASeq,0.0779,-0.4573
20200914_PM1123_A16,TRUE,TRUE,PM1123,PM1123_A16,,Depleted,Primary,Luminal,,20200914_PM1123_A16,20200914_PM1123_A16.mcd,Hiranmayi Ravichandran,2020-10-09T12:53:49-07:00,https://api.box.com/2.0/files/728562587785,537d9bacf4b5b5998b36f015d06cfa00a48bee87,True,data/20200914_PM1123_A16/20200914_PM1123_A16.mcd,20200914,PM1123_Z8_1_Case_RNASeq,0.0986,-0.3654
20200914_PM1123,TRUE,,PM1123,PM1123_A20,,Inflamed,Metastasis,Luminal,,2020914_PM1123,2020914_PM1123.mcd,Hiranmayi Ravichandran,2020-10-09T12:40:25-07:00,https://api.box.com/2.0/files/728567823755,4be6448377969a3097df130fd5f240e079a5618c,True,data/2020914_PM1123/2020914_PM1123.mcd,20200914,PM1123_Z11_1_Case_RNASeq,0.1901,0.0421
20201001_PM923_A2,TRUE,,PM0923,PM0923_A2,,Inflamed,Metastasis,Luminal,,20201001_PM923_A2,20201001_PM923_A2.mcd,Hiranmayi Ravichandran,2020-10-09T13:28:49-07:00,https://api.box.com/2.0/files/728577749539,0e23385a62986f02b2dccac857ad86ac798aa0c2,True,data/20201001_PM923_A2/20201001_PM923_A2.mcd,20201001,PM923_Z1_1_Case_RNASeq,0.1956,0.0669
20200914_PM1123_A12,TRUE,TRUE,PM1123,PM1123_A12,,Inflamed,Metastasis,Luminal,,20200914_PM1123_A12,20200914_PM1123_A12.mcd,Hiranmayi Ravichandran,2020-10-09T13:07:43-07:00,https://api.box.com/2.0/files/728573596307,fe58a48f4d8e526ddd6dc019ca027576cf1a70df,True,data/20200914_PM1123_A12/20200914_PM1123_A12.mcd,20200914,PM1123_Z6_1_Case_RNASeq,0.2224,0.1861
20200914_PM57,TRUE,TRUE,PM0057,PM0057_A1,,Inflamed,Metastasis,Basal,,20200914_PM57,20200914_PM57.mcd,Hiranmayi Ravichandran,2020-10-09T12:04:48-07:00,https://api.box.com/2.0/files/728552975097,2c98937efce23763076b96407f4757c53b69da8a,True,data/20200914_PM57/20200914_PM57.mcd,20200914,PM57_Z1_1_Case_RNAseq,0.2409,0.2686
20200914_PM922_A1,TRUE,TRUE,PM0922,PM0922_A1FSC,,Inflamed,Metastasis,Luminal,,20200914_PM922_A1,20200914_PM922_A1.mcd,Hiranmayi Ravichandran,2020-10-09T13:42:02-07:00,https://api.box.com/2.0/files/728582060647,c3429f8b5224b06a769e3f42e39661ab52034897,True,data/20200914_PM922_A1/20200914_PM922_A1.mcd,20200914,PM922_Z2_1_Case_RNASeq,0.2701,0.3984
20200914_PM1781_B7,TRUE,,PM1781,PM1781_B7,,Inflamed,Primary,Basal,,20200914_PM1781_B7,20200914_PM1781_B7.mcd,Hiranmayi Ravichandran,2020-10-09T10:26:48-07:00,https://api.box.com/2.0/files/728532234562,d87b2c92111311e086443de16e29a4ca79dc8a37,True,data/20200914_PM1781_B7/20200914_PM1781_B7.mcd,20200914,PM1781_Z2_1_RNASeq,0.306,0.5582
20200923_PM1781_A1,TRUE,,PM1781,PM1781_A1,,Inflamed,Metastasis,Basal,,20200923_PM1781_A1,20200923_PM1781_A1.mcd,Hiranmayi Ravichandran,2020-10-09T15:14:27-07:00,https://api.box.com/2.0/files/728601565037,017e94e3ec5a9657a66c24483888d5da615b1f91,True,data/20200923_PM1781_A1/20200923_PM1781_A1.mcd,20200923,PM1781_Z2_1_RNASeq,0.3803,0.8895
20210309_PM249_9,TRUE,FALSE,PM0249,PM0249_A1,,Depleted,Metastasis,Basal,Stroma-rich,20210309_PM249_9,20210309_PM249_9.mcd,Hiranmayi Ravichandran,,,,True,data/20210309_PM249_9/20210309_PM249_9.mcd,20210413,PM249_Z2_1_Case_RNASeq,,
20210310_PM57_B8,TRUE,FALSE,PM0057,PM0057_B8 ,S12-11956,,Primary,,,20210310_PM57_B8,20210310_PM57_B8.mcd,Hiranmayi Ravichandran,,,,True,data/20210310_PM57_B8/20210310_PM57_B8.mcd,20210413,,,
20210310_PM249_D6,TRUE,FALSE,PM0249,PM0249_D6,S13-22611,,Primary,,,20210310_PM249_D6,20210310_PM249_D6.mcd,Hiranmayi Ravichandran,,,,True,data/20210310_PM249_D6/20210310_PM249_D6.mcd,20210413,,,