compose-dev.yaml

# export VERSION=$(git describe --tags --abbrev=0)
# docker compose -f compose-dev.yaml up --build
services:
  api:
    build:
      context: .
      args:
        VERSION: ${VERSION}
    environment:
      SEQREPO_ROOT_DIR: /usr/local/share/seqrepo/2024-12-20
      # Dummy AWS credentials, don't need to use real ones
      AWS_ACCESS_KEY_ID: dummy
      AWS_SECRET_ACCESS_KEY: dummy
      AWS_DEFAULT_REGION: us-east-2
      GENE_NORM_DB_URL: http://gene-dynamodb-local:8000
      UTA_DB_URL: postgresql://anonymous@uta:5432/uta/uta_20241220
      WAGS_TAILS_DIR: /tmp/wags_tails

    ports:
      - 127.0.0.1:8001:80

    depends_on:
      uta:
        condition: service_started
      gene-dynamodb-local:
        condition: service_started

    working_dir: /tmp
    cap_drop:
      - ALL
    security_opt:
      - no-new-privileges:true
    tmpfs:
      - /tmp

    volumes:
      - uta_vol:/var/lib/postgresql/data
      - /usr/local/share/seqrepo:/usr/local/share/seqrepo

  uta:
    # Test:
    # psql -XAt postgres://anonymous@localhost/uta -c 'select count(*) from uta_20241220.transcript'
    # 329090
    image: biocommons/uta:uta_20241220
    environment:
      - POSTGRES_PASSWORD=some-password-that-you-make-up
    volumes:
      - uta_vol:/var/lib/postgresql/data
      - type: bind
        source: ./uta_20241220.pgd.gz
        target: /tmp/uta_20241220.pgd.gz
        read_only: true
        bind:
          create_host_path: false
      - ./uta-setup.sql:/docker-entrypoint-initdb.d/uta-setup.sql
    ports:
      - 127.0.0.1:5432:5432

  gene-dynamodb-local:
    image: cancervariants/gene-normalizer-ddb:2025-12-29
    ports:
     - 127.0.0.1:8000:8000

volumes:
  uta_vol:
    external: true