Information on Gapseq models

[anubhavdas0907]

Hello Christian,

I was looking into the species level models "uhgg201_refseq216_species_1.qza".

It is mentioned that these were generated using gapseq.

I am assuming, you used the genomes from MGnify. Is it true?

Can you please provide details on the the gapseq parameters you used to generate these models?

Thanks

Anubhav

[cdiener]

Sorry about that. I should have provided more info here. Yes those were models from MGnify, specifically the UHGG subset (version 2.01). The pipeline used to build the models can be found here using GAPSEQ with the docker container from here. The models were all gapfilled on the gut medium provided with GAPSEQ. The specific list of used MGnify assemblies can be found in the database manifest.

[anubhavdas0907]

Thanks, Christian.

That was very helpful.