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docs: address final JOSS editorial and reference feedback - #154
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Addresses the final editorial feedback and reference check for the JOSS submission.
Corrects the quoted questions, pronoun agreement, experimental-design/compliance wording, and figure caption/citations. Protects Oregon, Python, and qte capitalization in the bibliography; fixes Oliver & Boyd and the parsing of Stéfan van der Walt's surname; adds the qte DOI verified against its official CRAN record.
Validation: pre-commit checks and Pandoc citation/bibliography parsing pass. The draft-PDF workflow passed; all five rendered pages were inspected, including the corrected surname, capitalization, publisher, DOI, and figure citations.