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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

68 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 64 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 70 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 97 43

Repositories

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All CSS Dockerfile HTML Java JavaScript Jinja Jupyter Notebook Makefile Python Ruby Rust Shell TeX TypeScript Web Ontology Language

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Showing 10 of 82 repositories

owlmake Public

EBISPOT/owlmake's past year of commit activity

Rust 1 Apache-2.0 0 0 0 Updated Jul 24, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4's past year of commit activity

Java 97 Apache-2.0 43 97 (1 issue needs help) 15 Updated Jul 24, 2026
oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2's past year of commit activity

Java 1 Apache-2.0 0 0 10 Updated Jul 24, 2026
PEGASUS Public
Predicted effector gene standard

EBISPOT/PEGASUS's past year of commit activity

TypeScript 2 0 0 14 Updated Jul 24, 2026
gwas-blog Public
https://ebispot.github.io/gwas-blog

EBISPOT/gwas-blog's past year of commit activity

CSS 0 0 0 22 Updated Jul 24, 2026
gwas-sumstats-harmoniser Public
GWAS Summary Statistics Data Harmonisation

EBISPOT/gwas-sumstats-harmoniser's past year of commit activity

Python 29 21 16 12 Updated Jul 24, 2026
horned-owl Public Forked from phillord/horned-owl

EBISPOT/horned-owl's past year of commit activity

Rust 0 LGPL-3.0 18 0 0 Updated Jul 23, 2026
whelk-rs Public Forked from INCATools/whelk-rs
Whelk is an OWL EL reasoner

EBISPOT/whelk-rs's past year of commit activity

Rust 0 MIT 8 0 0 Updated Jul 23, 2026
gwas-sumstats-tools Public
A toolkit for processing, validating, and formatting GWAS (Genome-Wide Association Studies) summary statistics files for submission to the GWAS Catalog.

EBISPOT/gwas-sumstats-tools's past year of commit activity

Python 14 Apache-2.0 2 2 0 Updated Jul 22, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI's past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 1 Updated Jul 17, 2026

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