Geo-omics
- 17 followers
- Department of Earth and Environmental Sciences, University of Michigan
- https://sites.lsa.umich.edu/geomicro/
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GLAMR_omics_pipelines
GLAMR_omics_pipelines PublicMulti-omics pipeline for the GLAMR database. Documentation: https://geo-omics.github.io/GLAMR.docs
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snakemake_profiles
snakemake_profiles PublicSnakemake profiles for the lab servers and Great Lakes HPC
Python 1
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Characterizing-individual-Microcystis-colony-phycosphere-communities
Characterizing-individual-Microcystis-colony-phycosphere-communities PublicThis repository holds all metadata tables, scripts, and R code for the bioinformatic and statistical analysis associated with the manuscript: Individual Microcystis colonies harbor distinct bacteri…
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Heterotrophic-Bacteria-Dominate-Catalase-Expression-During-Microcystis-Blooms
Heterotrophic-Bacteria-Dominate-Catalase-Expression-During-Microcystis-Blooms PublicThis repository holds all analysis code and input files for the manuscript in prep: "Heterotrophic bacteria dominate catalase expression during Microcystis blooms."
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Repositories
- mibios Public
- GLAMR_omics_pipelines Public
Multi-omics pipeline for the GLAMR database. Documentation: https://geo-omics.github.io/GLAMR.docs
- CyanopeptideMatchingPythonVersion Public Forked from sheffera01/CyanopeptideMatchingPythonVersion
Cyano detection algorithm with outputs for data analysis
- 2016-2022-Western-Lake-Erie-Time-Series-Metagenomics-and-Metabolomics Public
This repository hosts all code, tables, and database information for the manuscript titled, "Diverse Cyanopeptides Follow Distinct Temporal Succession Patterns in Lake Erie Harmful Algal Blooms" by Hart et al. 2025.
- GVHD_mouse_metagenomes Public
- WLE_Saxitoxin_ADA Public
- H2O2-Incubation-Experiments Public
R code and input tables that were used to analyze data from H2O2 incubation experiments with western Lake Erie water
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