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0.1.8: tied genes untested in wilcoxon_test, safer result reuse and resume - #58

Merged

jaydu1 merged 24 commits into

mainfrom

library-fixes

Oct 5, 2026

Merged

0.1.8: tied genes untested in wilcoxon_test, safer result reuse and resume#58
jaydu1 merged 24 commits into
mainfrom
library-fixes

Commits on Oct 4, 2026
- test: drop sys.path hacks and other mechanical cruft
  
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  b335574
- test: merge duplicated result-reuse and alias tests
  
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  c489d6b
- test: consolidate memory and Wilcoxon dispatch tests
  
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  a955d60
- test: merge the CSC and CSR conversion tests
  
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  7554fdd
- test: table-drive the low-expression and estimability filter tests
  
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  9b77447
- test: run QC strategy parity on synthetic data in every format
  
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  c070e82
- test: test the real streaming size-factor path; tighten workflow tests
  
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  e614507
- test: check PCA and neighbors against scikit-learn
  
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  6aa54dd
- test: table-drive the small helper tests; assert what plots draw
  
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  5c1796a
- test: cover per-comparison scopes and close the remaining gaps
  
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  4459878
- refactor: resolve rank_genes_groups aliases with the shared helper
  
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  c0856ac
- fix: honour memory_limit_gb in shrink_lfc(method="full")
  
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  64d873d
- fix: let None arguments not invalidate cached results
  
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  7221270
- refactor!: remove the deprecated min_pct_both parameter
  
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  e032ced
- fix!: report all-tied genes as untested in wilcoxon_test
  
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  cf6012c
- fix!: treat all-tied genes as untested whatever tie_correct
  
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  4caa9ab
- refactor: delete the unused Wilcoxon kernels
  
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  98033c2
- fix: resume checkpoints that differ only in arguments left at None
  
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  2df193d
- fix: let aliases and rank_genes_groups share DE results
  
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  effff10
- fix: write the Wilcoxon Scanpy structure and stamp with the result
  
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  5165f6a
- feat: record nb_glm_test's frozen-control mode in the result
  
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  5aa2078
- fix: budget joblib's queued batches in the apeGLM worker count
  
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  1c57938
Commits on Oct 5, 2026
- chore: bump version to 0.1.8
  
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  c50e245
- docs: re-execute the tutorials on 0.1.8
  
  jaydu1
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  committed
  bf4eacc

Commits

Commits on Oct 4, 2026

Commits on Oct 5, 2026