Port the ICD-9 retirement to main - #64
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#57 retired ICD-9 but merged into feature/metadata-manager_v2/ARI, so none of it reached main. main still listed ICD9/ICD9CM as active sources, still grouped ICD-9 into the report's ICD column, and still drew the ICD9 node in the ontology diagram. Cherry-picks 661b860: drops the two ICD9 rows from meta-databases.csv, narrows the xref grouping in make_match_reports.py to ICD-10 only, and removes the ICD9 node and its edge from connecting_ontologies.drawio. Remaining ICD-9 mentions are third-party data describing someone else's xrefs (DOID's own ICD9CM column in sparql/DOID/) and one quotation about coding history, so they stay. Carries no data change. Refs #55. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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No data change. Three files plus a changelog entry.
Why this is needed
#57 retired ICD-9 and closed #55 — but it merged into
feature/metadata-manager_v2/ARI, notmain. None of it reached this branch, somainstill:ICD9andICD9CMas active sources indata/3-meta-database-sources/meta-databases.csvnotebook/ari-grounding/make_match_reports.pyconnecting_ontologies.drawioThis cherry-picks
661b860so the decision actually holds on the default branch.Scope
data/3-meta-database-sources/meta-databases.csvICD9/ICD9CMrowsnotebook/ari-grounding/make_match_reports.py["ICD10","ICD9","ICD-10","ICD-9"]→["ICD10","ICD-10"]connecting_ontologies.drawioThe ICD-9 codes in the data itself are removed separately in #61 — this PR is only the catalogue, the report script and the diagram.
What deliberately stays
sparql/DOID/autoimmune_disease_children.csvstill containsICD9CM:values, and two prevalence notes innotebook/mention ICD-9 in prose. Both are third-party content — DOID's own xref column, and a quotation about coding history — not ARI's catalogue. #57 left them too.Refs #55, which is already closed.
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