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needle

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Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.

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Name		Name	Last commit message	Last commit date
example		example
tools		tools
.gitignore		.gitignore
NOTES		NOTES
Needle.logo.png		Needle.logo.png
README.md		README.md
VIPR.table.txt.gz		VIPR.table.txt.gz
argparse.bash		argparse.bash
fasta_to_fastq.pl		fasta_to_fastq.pl
filter.contigs.py		filter.contigs.py
fungi.table.csv		fungi.table.csv
install.sh		install.sh
master.needle.sh		master.needle.sh
needle.sh		needle.sh
process.BWA.py		process.BWA.py
process.blast.py		process.blast.py
protozoa.table.csv		protozoa.table.csv
toy.example.bam		toy.example.bam
toy.example.bam.bai		toy.example.bam.bai
toy.example.fasta		toy.example.fasta
toy.example.fastq		toy.example.fastq
tree.of.life.filter.py		tree.of.life.filter.py

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needle

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About

Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.

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4 stars

4 watching

Report repository

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