This repository contains scripts for using Ripser (https://github.com/Ripser/ripser) and Hera (https://bitbucket.org/grey_narn/hera) with a Python interface.
- To run Ripser on a collection of distance matrices use getBarCodes.py
- To separate Ripser output by dimension to a input that is compatible with Hera, use separateRipser.py IMPORTANT: Code assumes there are just dimension 0 and dimension 1 barcodes. Code can be adapted easily.
- To plot PDs, use plotPDs.py (Must use output of separateRipser, not output of getBarCodes.py)
- To compute distances between two barcodes, use computePDDists.py.
For usage help, run python [filename] --h
Author: Melissa McGuirl Contact: melissa_mcguirl@brown.edu