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1. kundajelab/Fi-NeMo kundajelab/Fi-NeMo Public

   Identifying transcription factor binding sites from neural network contribution scores

   Python 24 1

2. kundajelab/DART-Eval kundajelab/DART-Eval Public

   Jupyter Notebook 52 5

3. dinuc_shuf dinuc_shuf Public

   Rust 2 1

4. kundajelab/chrombpnet kundajelab/chrombpnet Public

   Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

   Jupyter Notebook 241 67

5. kundajelab/ENCODE_scatac kundajelab/ENCODE_scatac Public

   Python 12 2

6. kundajelab/tfmodisco kundajelab/tfmodisco Public

   TF MOtif Discovery from Importance SCOres

   Python 188 39