use_arango_id option, fix graphsink key - #565
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kevinschaper merged 1 commit intoSep 16, 2026
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Derive node ids and edge endpoints from ArangoDB document handles under a new use_arango_id option (--use-arango-id), keeping a document's own id under document_id_property, and key edges by their ArangoDB _id so parallel edges survive the in-memory graph. GraphSink now honours a record's key without also passing it as an attribute, which raised TypeError. Cherry-picked from 4f5dd5b on fix/arango-source-id-fidelity, adapted to upstream's defaults: category ["biolink:NamedThing"] and predicate biolink:related_to rather than the collection name (fork commit 004034c). Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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Add a new use_arango_id option (--use-arango-id), which keeps a document's own id under document_id_property, and key edges by their ArangoDB _id so parallel edges survive the in-memory graph.
GraphSink now honours a record's key without also passing it as an attribute, which raised TypeError.