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Precompiled binary freezes on Arch Linux

Status: Open.

#221 In iqtree/iqtree3;

· nrizzo opened on Sep 18, 2026

-madd models are also fitted in the partition-merging phase, so --merge-model cannot keep merging cheap when a user matrix must be in the final selection

modelfinder2

Status: Open.

#219 In iqtree/iqtree3;

· roblanf opened on Sep 17, 2026

Confusing user output for Partitionfinder-mAIC

Status: Open.

#218 In iqtree/iqtree3;

· roblanf opened on Sep 17, 2026

Resume from checkpoint failed with "Assertion `i == maxnum-1' failed."

Status: Open.

#216 In iqtree/iqtree3;

· SethMusker opened on Sep 10, 2026

Faster free rates

modelfinder2

Status: Open.

#206 In iqtree/iqtree3;

· roblanf opened on Aug 26, 2026

Faster -mwopt

Status: Open.

#205 In iqtree/iqtree3;

· roblanf opened on Aug 26, 2026

IQ2MC Checkpointing on a large tree

Status: Open.

#201 In iqtree/iqtree3;

· RMNguy opened on Aug 10, 2026

Logfile and stdout

Status: Open.

#200 In iqtree/iqtree3;

· benjamin-lieser opened on Aug 5, 2026

QC.Mammal frequencies

Status: Open.

#199 In iqtree/iqtree3;

· roblanf opened on Aug 5, 2026

SH-aLRT changes when using jackknife

Status: Open.

#198 In iqtree/iqtree3;

· digitalwright opened on Aug 4, 2026

Jackknife proportion is inverted

Status: Open.

#196 In iqtree/iqtree3;

· digitalwright opened on Aug 1, 2026

Just skip bootstrap if less than 4 sequences instead of error

Status: Open.

#195 In iqtree/iqtree3;

· bernt-matthias opened on Aug 1, 2026