Issues

• initialize keeps the amount of a species whose initial assignment does not re-evaluate after its rule compartment changed

  matthiaskoenig/sbmlsim#344 · Filter by author matthiaskoenig opened on Oct 17, 2026

• parameters_of parses the SBML of the model again on every call

  matthiaskoenig/sbmlsim#332 · Filter by author matthiaskoenig opened on Oct 15, 2026

• Models compile slowly with roadrunner's default JIT, MCJIT

  matthiaskoenig/sbmlsim#331 · Filter by author matthiaskoenig opened on Oct 15, 2026
  4

• Guest et al criterion (especially for DDI evaluation)

  matthiaskoenig/sbmlsim#326 · Filter by author matthiaskoenig opened on Oct 14, 2026

• Better altman plots (also for subsets)

  matthiaskoenig/sbmlsim#325 · Filter by author matthiaskoenig opened on Oct 14, 2026

• The margins of a figure grow with its number of panels

  matthiaskoenig/sbmlsim#323 · Filter by author matthiaskoenig opened on Oct 14, 2026

• Functions of SBML math which the event compiler cannot evaluate are only warned

  feature
  matthiaskoenig/sbmlsim#299 · Filter by author matthiaskoenig opened on Oct 12, 2026

• Migrate to polars 2

  matthiaskoenig/sbmlsim#271 · Filter by author matthiaskoenig opened on Oct 9, 2026

• fit_mappings belong after the tasks

  matthiaskoenig/sbmlsim#248 · Filter by author matthiaskoenig opened on Oct 7, 2026

• Remove the reports from the experiment

  matthiaskoenig/sbmlsim#247 · Filter by author matthiaskoenig opened on Oct 7, 2026

• Implement core functionality in rust

  feature
  matthiaskoenig/sbmlsim#227 · Filter by author matthiaskoenig opened on Oct 2, 2026

• Support AMICI simulator

  feature
  matthiaskoenig/sbmlsim#220 · Filter by author matthiaskoenig opened on Sep 21, 2026

• Support COPASI simulator

  feature
  matthiaskoenig/sbmlsim#219 · Filter by author matthiaskoenig opened on Sep 21, 2026

• Support python 3.15

  feature
  matthiaskoenig/sbmlsim#218 · Filter by author matthiaskoenig opened on Sep 21, 2026
  1

• Check some tests with libroadrunner of the sbml-test suite

  bug
  matthiaskoenig/sbmlsim#212 · Filter by author matthiaskoenig opened on Sep 14, 2026
  2

• Complete PEtab support: the test suite, the benchmark collection and PEtab v2

  featureparameter estimation
  matthiaskoenig/sbmlsim#211 · Filter by author matthiaskoenig opened on Sep 14, 2026

• Support prior distributions

  featureparameter estimation
  matthiaskoenig/sbmlsim#190 · Filter by author matthiaskoenig opened on Feb 1, 2026
  1

• Interactive web reports and static PDF reports

  featurereport
  matthiaskoenig/sbmlsim#180 · Filter by author matthiaskoenig opened on Jan 30, 2026
  3