Dennis Lab

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1. CiFi CiFi Public

   Pipeline for processing and analyzing CiFi data

   Shell 11 1

2. cifiasm cifiasm Public

   HiFi+CiFi Assembly & Scaffolding workflow

   Python 11 1

3. cifi-toolkit cifi-toolkit Public

   Toolkit for downstream processing of CiFi long reads.

   C++ 6

4. 2026-genome-karyoplot 2026-genome-karyoplot Public

   Python 2

5. 2026-genome-circos 2026-genome-circos Public

   Python 2

6. 2026-voles-assembly 2026-voles-assembly Public

   source code for: Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding

   2