All notebooks fail when trying to instal probml-utils

[jdtardos]

When executing this code:

try:
from probml_utils import latexify, savefig, is_latexify_enabled
except ModuleNotFoundError:
%pip install -qq git+https://github.com/probml/probml-utils.git
from probml_utils import latexify, savefig, is_latexify_enabled

Error Obtained:

Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Preparing metadata (setup.py) ... done
Preparing metadata (setup.py) ... done
Building wheel for probml-utils (pyproject.toml) ... done
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
Building wheel for numba (setup.py) ... error
ERROR: Failed building wheel for numba
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
Building wheel for llvmlite (setup.py) ... error
ERROR: Failed building wheel for llvmlite
ERROR: Could not build wheels for numba, llvmlite, which is required to install pyproject.toml-based projects

ModuleNotFoundError Traceback (most recent call last)
in <cell line: 6>()
6 try:
----> 7 from probml_utils import latexify, savefig, is_latexify_enabled
8 except ModuleNotFoundError:

ModuleNotFoundError: No module named 'probml_utils'

During handling of the above exception, another exception occurred:

ModuleNotFoundError Traceback (most recent call last)
in <cell line: 6>()
8 except ModuleNotFoundError:
9 get_ipython().run_line_magic('pip', 'install -qq git+https://github.com/probml/probml-utils.git')
---> 10 from probml_utils import latexify, savefig, is_latexify_enabled
11
12 from jax.scipy.stats import norm

ModuleNotFoundError: No module named 'probml_utils'

In a Local Machine

Same problem happens in a local machine with conda environments based on python 3.11 or 3.10.
However, it works in a conda environment based ob python 3.8

[patel-zeel]

Thank you for flagging the issue, @jdtardos. I tried to fix this by fixing some package versions in probml-utils library, can you please try again and see if the notebooks work as expected?

[jdtardos]

Thanks a lot, @patel-zeel. Now it's working OK on colab, with the following minor error msg:

ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
plotnine 0.12.3 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible.

But despite the message, it works nicely.

Still not working in a local machine with a fresh Anaconda3 installation (Python 3.11.4)

[jdtardos]

The instalation of probml-utils does not work in a new conda environment with python=3.11. Steps to reproduce:

conda create --name probml python=3.11
conda activate probml
conda install scikit-learn matplotlib pandas seaborn
pip install git+https://github.com/probml/probml-utils.git

On Mac with M1, after a few minutes, It fails with multiple errors while compiling sklearn cython files.

Workaround: do the same with python=3.10 and it works nicely.

[alexkrz]

Hi,
I tried to run the notebooks on Colab as well as locally on my Macbook.
The common parts of the notebooks execute well with the current versions of matplotlib, scipy, jax, etc.
But the package probml-utils is causing some trouble.
It also currently takes a while to install in a Colab environment and I cannot confirm that it ever succeeds.

Would it be possible to upgrade the depenedencies of probml-utils to install smoothly in a current Colab session?