A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
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Jul 21, 2026 - Python
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omics
Here are 320 public repositories matching this topic...
A collection of awesome things regarding all omics.
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May 6, 2025
Development repository for the Bioconductor package 'mixOmics '
r genomics rstats bioconductor r-pkg r-package omics multivariate-analysis multivariate-statistics genomics-visualization r-project genomics-data rstats-package
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May 25, 2026 - R
Healthcare and biomedical datasets, for AI/ML
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Feb 23, 2025
Visual self-service analytics platform for big omics data.
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Jul 23, 2026 - R
Medea: An AI agent for therapeutic reasoning across biological contexts
omics immunotherapy ai-agents target-discovery tool-use therapeutics synthetic-lethality foundation-models agentic-ai ai-scientist therapeutic-ai
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Jul 17, 2026 - Python
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
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Jul 4, 2025 - HTML
Unified knowledge-driven network inference from omics data
optimization graphs constrained-optimization milp omics network-analysis cvxpy biological-networks omics-data-integration
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Jul 22, 2026 - Python
From geospatial to spatial -omics
r exploratory-data-analysis spatial eda rstats bioconductor r-package omics transcriptomics spatial-statistics esda spatial-transcriptomics
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Jul 16, 2026 - R
Picotti lab data analysis package.
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Mar 3, 2026 - R
Prize-Collecting Steiner Forests for Interactomes
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Jun 18, 2024 - Jupyter Notebook
Spatial omics in the browser for hundreds of images at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/
browser viewer spatial spatial-analysis spatial-data omics spatial-proteomics mcd histology spatial-transcriptomics zarr visium multiplexed-imaging imaging-mass-cytometry spatial-omics xenium spatial-biology
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Jul 23, 2026 - Python
compositional data analysis toolbox
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Dec 15, 2022 - Jupyter Notebook
scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics
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Jan 30, 2026 - Jupyter Notebook
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
visualization statistics longitudinal-data microbiome omics metagenomes metagenomic-analysis microbiome-analysis phyloseq dada2 omics-data-integration amplicon-sequencing microbiome-data qiime2 16s-rrna microbiome-workflow
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Jun 6, 2026 - R
Trends in Computational Metabolomics (2021–2025)
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May 18, 2026 - Jupyter Notebook
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
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Jul 20, 2026 - Python
Open-Source Software for Omic Data Analysis and Visualization
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Feb 25, 2026 - R
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