dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Software platform for clinical neuroimaging studies
v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
Utility functions for working with DICOM and BIDS neuroimaging data
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Reconstruction of preprocessed q-space images (dMRI)
a set of function to make it easier to create behavioral, EEG, fMRI experiment with psychtoolbox
BIDSAlign a library for preprocessing and align multiple datasets to a common template.
Create a BIDS structure for a DICOM folder.
BV2BIDS is a command line tool that creates the EEG-BIDS folder hierarchy from BVCD files.
The NEXT fMRI analyisis workflow of xIA
👁️ CRAN-published R package for reproducible pupillometry preprocessing with BIDS compliance, automated QC reports, and scalable pipeline tools.
Convert HCP Lifespan, Aging, and Development data to BIDS format
Easily convert to, organize, and manage BIDS imaging data in Python
afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.
Tutorials for organising MEG/EEG and MRI data into BIDS standard.
Timer Application for Experiment
Tools created for sharing of MRI and behavioural data as part of my work with Professor Kate Watkins in the Speech & Brain Lab at the University of Oxford.
Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution
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